Bioinformatics
Compilers and Programming Tools
Computational Chemistry
File System
Finite Element Solvers
Graphics
Miscellaneous
Numerical Libraries
Optimization
Parallel Programming Languages and Tools
Queueing and Scheduling Systems
Solid Modeling
Statistics

BLAST

National Center for Biotechnology Information

BLAST is the Basic Local Alignment Search Tool. It is a set of search programs designed to explore all available sequence databases in either protein or DNA. This software has been designed to achieve great speeds while keeping a well-defined statistical interpretation.

BLAST is available on the following HPC machines:

Unisys

2.2.11

http://gears.aset.psu.edu/hpc/software/bioinf/blast

02-Apr-2007

Versions listed in bold are the default version.

Intel C++ Compiler

Intel

The Intel C++ Compiler delivers optimal performance on all Intel 32-bit processors, including the Pentium 4 and Intel Xeon, the 64-bit Intel Itanium Processor, the 64-bit x86_64 processor, and the AMD Opteron

ICC is available on the following HPC machines:

Unisys

9.0

http://gears.aset.psu.edu/hpc/software/comp/icc

31-Jan-2006

Versions listed in bold are the default version.

Intel Fortran Compiler

Intel

The Intel Fortran Compiler delivers optimal performance on all Intel 32-bit processors,including the Pentium 4 and Intel Xeon processors, and the 64-bit Intel Itanium processor.

IFC is available on the following HPC machines:

Unisys

9.0

http://gears.aset.psu.edu/hpc/software/comp/ifc

31-Jan-2006

Versions listed in bold are the default version.

ABAQUS

Hibbitt, Karlsson & Sorensen, Inc. (HKS)

ABAQUS is a finite element solver used for stress, heat transfer, and other types of analysis in mechanical, structural, civil, biomedical, and related engineering applications.

Abaqus is available on the following HPC machines:

Unisys

6.6-1

http://gears.aset.psu.edu/hpc/software/fem/abaqus

02-Apr-2007

Versions listed in bold are the default version.

ANSYS

Ansys, Inc.

ANSYS/Multiphysics is a finite element design and analysis software that allows a user to model problems in structures, thermal/fluid flow and electromagnetics.

Ansys is available on the following HPC machines:

Unisys

11.0

http://gears.aset.psu.edu/hpc/software/fem/ansys

31-Mar-2008

Versions listed in bold are the default version.

Intel Math Kernel Library

Intel

The Intel Math Kernel Library provides developers of scientific and engineering software with a set of linear algebra, fast Fourier transforms and vector math functions optimized for the latest Intel Pentium 4 and Itanium processors, as well as the x86_64 processors from both Intel and AMD. MKL contains LAPACK, the basic linear algebra subprograms (BLAS), and the extended BLAS (sparse). In addition, there is a set of fast Fourier transforms in single- and double-precision, real and complex data types with both Fortran and C interfaces. MKL also includes a set of vectorized transcendental functions in the Vector Math Library (VML), offering both high performance and excellent accuracy compared to the libm functions for most of the processors.

MKL is available on the following HPC machines:

Unisys

8.01

http://gears.aset.psu.edu/hpc/software/numlib/mkl

20-Feb-2007

Versions listed in bold are the default version.

ILOG CPLEX

ILOG

ILOG CPLEX delivers high-performance, robust, flexible optimizers for solving linear, mixed-integer and quadratic programming problems in mission-critical resource allocation applications.

cplex is available on the following HPC machines:

Unisys

9.0

No on-line instructions available

31-Jan-2006

Unisys

9.1

No on-line instructions available

31-Jan-2006

Versions listed in bold are the default version.

ILOG Scheduler

ILOG

ILOG Scheduler is a software component that supplements ILOG Solver by providing specialized modeling and algorithmic enhancements for solving problems that involve scheduling resources and tasks over a given period of time.

scheduler is available on the following HPC machines:

Unisys

6.1

No on-line instructions available

31-Jan-2006

Versions listed in bold are the default version.

ILOG SOLVER

ILOG

ILOG Solver is ILOG's constraint-based optimization engine, providing cutting-edge optimization technology that uses logical contraints to power scheduling, sequencing, timetabling, configuration, dispatching and resource-allocation applications.

solver is available on the following HPC machines:

Unisys

6.1

No on-line instructions available

31-Jan-2006

Versions listed in bold are the default version.

MPIGM

Myricom

MPIGM is a version of the Argonne National Laboratory's MPI implementation, MPICH, with functionality added to enable it to run natively over Myrinet, a very high-bandwidth, ultra low-latency network interconnect.

MPIGM is available on the following HPC machines:

Unisys

1.2.5.10

http://gears.aset.psu.edu/hpc/software/parlib/mpigm

20-Feb-2007

Versions listed in bold are the default version.

R

Free Software Foundation

R is a language and environment for statistical computing and graphics. R can be considered as a different implementation of S. There are some important differences, but much code written for S runs unaltered under R.

R is available on the following HPC machines:

Unisys

2.2.1

http://gears.aset.psu.edu/hpc/software/statistics/r/

09-Nov-2006

Versions listed in bold are the default version.